Replace TrayManager.getInstance() with constructor
Pass Main to TrayManager
Create WindowHandler in TrayManager
Pass WindowHandler to RegisteredFrames
Only create ItoopieHostnameVerifier once, in gui/Main
Pass gui/Main to SettingsFrame
Pass gui/Main to ItoopieHostnameVerifier and CertificateGui
Sync on lock in ItoopieHostnameVerifier.clearRecentlyDenied()
Comment out some main() and other test code
Make some fields non-static
Remove some static initializers
Start gui/Main before the tray icon
Fixed the tray icon on Gnome with a delay in TrayManager
Fixed ssl certificate ui to only be shown once.
Added a special rate tracker for bandwidth (rate / 1024).
Fixed some repaint() issues with labels and buttons.
Enabled updating router info.
